PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g028990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 575aa    MW: 63901.5 Da    PI: 7.7722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g028990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11428474455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I ++q
  Sopen05g028990.1 428 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITDMQ 474
                       799***********************66......***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-5445233IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.056424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16425486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-12427478No hitNo description
PfamPF000104.2E-9428474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14428483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-15430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MTMLWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNMLS DLVERPNASN  60
FSWNYAIFWQ ISRSKLGELV LGWGDGCCRE AREGEESELT RILNIRLADE AQQRMRKRVL  120
QKLHMFFGGT DEDNYVSGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFSA GKHVWLSDVM  180
RSSVDYCSRS FLMKSAGMQT VVLIPTDIGV VELGSVRTIP ESLELVNSIK SCFSSFLAQV  240
RAKQAAVVAE KKNGNNSVIP SSFPFDQSKE NPKIFGQNLE SGSTEFREKL VRRKPVDGPL  300
EMYRNGNRAP IINTQNGVRP VSWASFGNVK PGNSVELYSP QAPPNNLREF VNGGREELLL  360
NSLQHQKPGG MQIDFTNSRP VVSPVPTVES EHSDVEVSCK EKHAGPADER RPRKRGRKPA  420
NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAHI TDMQKRIRDA  480
EYKLERRGST SVDAADINIE AASDEVIVRA RCPLGTHPVA KVVEAFKETQ VSVVESKLAV  540
GNDTVYHTFV VKSSGPEQLT KEKLMAAFSG ESNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A8e-24412345193Transcription factor MYC3
4rs9_A8e-24412345193Transcription factor MYC3
4rqw_B8e-24412345193Transcription factor MYC3
4rqw_A8e-24412345193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409417RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074780.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLK4C1880.0K4C188_SOLLC; Uncharacterized protein
STRINGSolyc05g050560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein